Back around 1998 through about 2004, I tried my best to understand how to manage data from a micro-array experiment and how to analyze it properly. I started some web pages to describe what I was learning, but I never quite got them completed. I want to include links to those pages here. If I ever get the time and energy, I will update those pages and place them on my new website.
Here are some files that provide a general overview of the steps involved with micro-array data analysis.
- Bibliography
- Data management
- Design
- Differential expression
- Import
- Normalization
- Software
- Steps
- Supervised learning
- Unsupervised learning
- What is a microarray
Here are some files that provide information on a specific topic.
Add links to these files (see this page for links)
- RMA normalization (October 24, 2005)
- Gene information 2 (October 12, 2005)
- Naming conventions (September 8, 2005)
- Gene information 1 (September 6, 2005)
- Public data (August 18, 2005)
- Normalization 2 (July 28, 2005)
- Permutation tests (July 27, 2005)
- Short course (July 26, 2005)
- Dumping data from R to a text file (June 27, 2005)
- Information theory (June 1, 2005)
- ROC curve (May 26, 2005)
- Dimension reduction (May 25, 2005)
- Disaster averted (May 16, 2005)
- General overview (April 22, 2005)
- Articles 2 (March 10, 2005)
- Articles 1 (March 7, 2005)
- S-Plus Server (December 8, 2004)
- S+ArrayAnalyzer (June 22, 2004)
- Articles 1 (March 18, 2004)
Pages that I am still looking for
- A simple trick in R (October 11, 2005)
- Statistical Analysis of Microarrays by Insightful (August 31, 2005)
- Acuity microarray analysis software (May 6, 2004)