[StATS]: An Ensembl search (February 1, 2006).
While working on a microarray experiement with a researcher, we had to find a bit of information about a gene with the gene symbol NCOA3. We went to the Ensembl web site (www.ensembl.org) and did a search which yielded the following information.
2. Ensembl Gene: ENSG00000124151
Ensembl gene ENSG00000124151 has 3 transcripts: ENST00000262979, ENST00000340189, ENST00000341724 and associated peptides: ENSP00000262979, ENSP00000342123, ENSP00000345671
Nuclear receptor coactivator 3 (EC 18.104.22.168) (NCoA-3) (Thyroid hormone receptor activator molecule 1) (TRAM-1) (ACTR) (Receptor-associated coactivator 3) (RAC-3) (Amplified in breast cancer-1 protein) (AIB-1) (Steroid receptor coactivator protein 3) (SRC- [Source:Uniprot/SWISSPROT;Acc:Q9Y6Q9]
The gene has the following external identifiers mapped to it:
Affymx Microarray U133: g2565049_3p_a_at, 207700_s_at, g2318005_3p_a_at, Hs.225977.1.A2_3p_a_at, g5729725_3p_a_at, 211352_s_at, 209062_x_at, 209060_x_at
CCDS: CCDS13406, CCDS13407.1, CCDS13407, CCDS13406.1
EMBL: AL034418, AF012108, AB209863, BC092516, AF010227, AF036892, AF016031
GO: GO:0005634, GO:0046966, GO:0007165, GO:0004402, GO:0030528, GO:0030521, GO:0045893, GO:0008415, GO:0050681, GO:0005515, GO:0003713, GO:0016740, GO:0004871
HGNC Symbol: NCOA3, 7670
IPI: IPI00220081, IPI00069270.1, IPI00220079, IPI00220082.1, IPI00220079.1, IPI00220081.1, IPI00220082, IPI00220080.1, IPI00069270, IPI00220080
Predicted UniProt/TrEMBL: Q59EE8, Q59EE8_HUMAN, Q569F6, Q569F6_HUMAN
Protein ID: CAC17693.1, BAD93100, AAB92368, CAI42141.1, AAC51849, AAC51849.1, AAC51677, AAC51663, AAB92368.1, CAI42141, BAD93100.1, AAC51677.1, AAC51663.1, CAB40662, CAC17693, AAH92516, CAB40662.1, AAH92516.1
RefSeq DNA: NM_006534, NM_006534.2, NM_181659, NM_181659.1
RefSeq peptide: NP_858045.1, NP_006525.2, NP_006525, NP_858045
UniProt/Swiss-Prot: Q9Y6Q9, NCOA3_HUMAN
I want to use this example as an excuse to try to document the various naming conventions used in genetics.<U+FFFD> As you can see from my previous weblog entries, this is something I have tried to do in the past, but have just been too busy to follow-up on.
Previous weblog entries on this topic:
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